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Program #

Date	{{DATE_AND_TIME}}
Command	{{COMMAND}}
Version	{{VERSION}}
Runtime	{{RUNTIME}}

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	#Reads	#Bases	Read length	Q20	Q30	GC	N
{{NAME}}	{{N_READS}}	{{N_BASES}}	{{LENGTHS}}	{{Q20}}	{{Q30}}	{{GC}}	{{NS}}

Base composition statistics/plots are based on {{READS}} ({{PCT}}) of {{LABEL}} reads sampled during execution.

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Process summary #

Stage	Step		Reads	(%)	Bases	(%)	Mean Bases
{{STAGE}}	{{LABEL_1}}	{{LABEL_2}}	{{READS}}	{{PCT_READS}}	{{BASES}}	{{PCT_BASES}}	{{AVG_BASES}}

{{N_ENABLED_PROC}} of {{N_TOTAL_PROC}} processing steps enabled, {{N_ENABLED_FILT}} of {{N_TOTAL_FILT}} filtering steps enabled. Numbers of reads are given in terms of input reads, meaning that a merged read counts for two. For Processing and Filtering, the numbers of bases specify how many were lost during each step.

Sequence duplication levels #

Estimated that {{PCT_UNIQUE}} of reads are unique.

Estimated that {{PCT_UNIQUE}} of reads are unique, including {{PCT_UNIQUE_1}} of mate 1 reads and {{PCT_UNIQUE_2}} of mate 2 reads.

Consensus adapter sequences #

Found {{OVERLAPPING_PAIRS}} overlapping pairs of which {{PAIRS_WITH_ADAPTERS}} contained adapter sequence(s).

{{NAME_1}}	{{REFERENCE_1}}		{{NAME_2}}	{{REFERENCE_2}}
	{{ALIGNMENT_1}}			{{ALIGNMENT_2}}
Consensus	{{CONSENSUS_1}}		Consensus	{{CONSENSUS_2}}
Qualities	{{QUALITIES_1}}		Qualities	{{QUALITIES_2}}

Top {{N_KMERS}} most common {{KMER_LENGTH}}-bp 5' adapter kmers #

	Adapter 1 k-mer	Count	%		Adapter 2 k-mer	Count	%
{{INDEX}}	{{OPTIONAL_KMER_1}}	{{OPTIONAL_COUNT_1}}	{{OPTIONAL_PCT_1}}		{{OPTIONAL_KMER_2}}	{{OPTIONAL_COUNT_2}}	{{OPTIONAL_PCT_2}}

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Per sample statistics #

Show/hide per-barcode statistics